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References : OUTPACE

lundi 12 mai 2014

References : OUTPACE

References of the OUTPACE community since 2008

Alvain, S., Moulin, C., Dandonneau, Y., & Bréon, F. M. (2005). Remote sensing of phytoplankton groups in case 1 waters from global SeaWiFS imagery. Deep Sea Research Part I: Oceanographic Research Papers, 52(11), 1989-2004.

Alvain, S., Moulin, C., Dandonneau, Y., & Loisel, H. (2008). Seasonal distribution and succession of dominant phytoplankton groups in the global ocean: A satellite view. Global Biogeochemical Cycles, 22(3).

Atkinson A, Ward P, Hunt BPV, Pakhomov EA, Hosie GW (2012) Zooplankton in Southern Ocean food web models: a critique of available data. CCAMLR Science 19: 171-218.

Baklouti, M., Faure, V., Pawlowski, L., Sciandra, A., (2006) Investigation and sensitivity analysis of a mechanistic phytoplankton model implemented in a new modular numerical tool (Eco3M) dedicated to biogeochemical modelling.. Progress in Ocenography, 71:34-58

Baklouti, M., Chevalier, C., Bouvy, M., Corbin, D., Pagano, M., Trousselier, M. and Arfi , R., 2011. A study of plankton dynamics under osmotic stress in an estuary (Senegal River) using a 3D mechanistic model. Ecological Modelling (sous presse).

Bar-Zeev Edo, Eyal Rahav, Gal Dishon, Barak Herut, Nurit Kress, Tom Berman, and Ilana Berman-Frank. 2011. Transparent exopolymer particle (TEP) dynamics in the eastern Mediterranean Sea. Marine Ecology Progress Series. 431:107-118

Bar-Zeev, E., E., Avishay I., Bidle K.D., and Berman-Frank I. (2013). Programmed cell death in the marine cyanobacterium Trichodesmium mediates carbon and nitrogen export The ISME Journal, 1–9

Bellomo, L., M. Saillard, S. Pioch, F. Barbaresco, and M. Lesturgie, ’’Waveform design based on Phase Conjugation and Time Reversal’’, Waveform Design and Diversity for Advanced RADAR Systems, IET, 2012.

Bellomo, L., S. Pioch, M. Saillard, and E. Spano, ’’Time Reversal Experiments in the Microwave Range: Description of the RADAR and results’’, Progress In Electromagnetic Research, vol. 104, 427-448, 2010.

Berman-Frank, I., and Eyal Rahav. Nitrogen fixation as a source for new production in the Mediterranean Sea: a review. 2012. Life in the Mediterranean Sea. N. Stambler (Ed.). Nova Science Publishers. NY, Ch. 8, 199-226.

Berman-Frank, I., Chen, Yi-bu, Gao, Y., Fennel, K., Follows, M., Milligan, A., and Falkowski P.G. 2008. Feedbacks Between the Nitrogen, Carbon and Oxygen Cycles. Capone, DG, D Bronk, M Mulholland and EJ Carpenter, Eds. Nitrogen in the Marine Environment, 2nd edition. San Diego, Academic Press/ Elsevier ISBN 9780123725226.

Blain S., S. Bonnet, and C. Guieu, 2008, Dissolved iron distribution in the tropical and sub tropical South Eastern Pacific, Biogeosciences, 5, 269-280

Bonnet, S., Biegala, I., Dutrieux, P., Slemons, L., Capone, D.G. Nitrogen fixation in the western equatorial Pacific: Rates, diazotrophic cyanobacterial size class distribution, and biogeochemical significance, Global Biogeochemical Cycles, 23, GB3012, doi:10.1029/2008GB003439 (2009)

Bonnet, S., Gregori, G., Barani, A., S. Mostefaoui, S., Cornet-Barthaux, V., Dekeazemacker, J., Charrière, B., Dupouy, C., Rodier, M., Gérard, P. Efficient transfer of fixed N2 from Trichodesmium to picophytoplankton (Synechococcus) and microphytoplankton (Diatoms) revealed at the single cell level by nanometer-scale secondary ion mass-spectrometry (NanoSIMS). In rev., Nature Geosciences

Bonnet, S., Grosso, O., Moutin, T. Planktonic Dinitrogen Fixation along a longitudinal gradient across the Mediterranean Sea during the stratified period (BOUM cruise). Biogeosciences 8, 2257–2267 (2011)

Bonnet, S., Guieu, C., Bruyant, F., Prasil, O., Raimbault, P., Gorbunov, M.Y., Zehr, J.P., Grob, C., Masquelier, S.M., Garczareck, L., Moutin, T., Van Wambeke, F., Claustre, H. Nutrient limitation of primary productivity in the Southeast Pacific (BIOSOPE cruise). Biogeosciences, 5, 1-11 (2008)

Bonnet, S., Dekaezemacker, J., Turk-Kubo, K., Moutin, T., Grosso, O., Zehr, J., Capone, D.G. Aphotic N2 fixation in the Eastern Tropical South Pacific Ocean. Accepted. Plos One.

Bonnet, S., Webb, E., Panzeca, C., Karl, D.M., Capone, D.G., and Sanudo-Wilhelmy. Vitamin B12 excretion by cultures of the marine cyanobacteria Crocosphaera and Synechococcus. Limnology and Oceanography, 55(5), 1959-1964 (2010)

Bouffard J., L. Renault, A. Pascual, S. Ruiz, C. Dufau, and J. Tintoré, 2012 : Sub-surface small scale eddy dynamics from multi-sensor observations and modelling, Progress in Oceanography., 106, Pages 62–79.

Bouffard J., L. Roblou, F. Birol, A. Pascual, L. Fenoglio-Marc, M. Cancet, R. Morrow and Y. Ménard, 2011: Introduction and assessment of improved coastal altimetry strategies: case study over the North Western Mediterranean Sea. Chapter 12 in S. Vignudelli, A.G. Kostianoy, P. Cipollini, J. Benveniste (eds.), Coastal Altimetry, Springer-Verlag Berlin Heidelberg, 578 pp, 2011.

Bouffard J., A. Pascual, S. Ruiz, Y. Faugère, and J. Tintoré, 2010: Coastal and mesoscale dynamicscharacterization using altimetry and gliders: A case study in the Balearic Sea, J. Geophys. Res., 115, C10029, doi:10.1029/2009JC006087.

Bouffard J., L. Renault, A. Pascual, S. Ruiz, C. Dufau, and J. Tintoré, 2012 : Sub-surface small scale eddy dynamics from multi-sensor observations and modelling, Progress in Oceanography., 106, Pages 62–79.

Bouffard J., Vignudelli S., Cipollini P and Ménard Y., 2008(b): Exploiting the potential of an improved multi-mission altimetric dataset over the coastal ocean. Geophysical Research Letters, 35, L10601, DOI:10.1029/2008GL033488.

Bressac M., C. Guieu. Post-depositional processes: What really happens to new atmospheric iron in the ocean surface? Global Biogeochemical Cycles, doi:10.1002/gbc.20076, in press.

Capone, D.G. in Handbook of Methods in Aquatic Microbial Ecology. (ed. J.J. Cole) 621–631 (Lewis Press, Boca Raton; 1993).
Claustre H. et al. (2004). An intercomparison of HPLC phytoplankton pigment methods using in situ samples: Application to remote sensing and database activities, Mar. Chem., 85, 41– 61.

Crombet, Y., Leblanc, K., Quéguiner, B., Moutin, T., Rimmelin, P., Ras, J., Claustre, H., Leblond, N., Oriol, L., and Pujo-Pay, M. 2011. Deep silicon maxima in the stratified oligotrophic Mediterranean Sea, Biogeosciences, 8, 459-475, doi:10.5194/bg-8-459-2011.

Cuypers, Y., B. Vinçon-Leite, A. Groleau, B. Tassin, J-F. Humbert « Impact of internal waves on the spatial distribution of Planktothrix rubescens (cyanobacteria) in an alpine lake » The ISME Journal doi:10.1038/ismej.2010.154. 2010

Cuypers, Y., P. Bouruet-Aubertot, C. Marec, and J.-L. Fuda. Characterization of turbulence and validation of a fine-scale parametrization in the Mediterranean Sea during the BOUM experiment. Biogeosciences, 9, 3131–3149, 2012

Cuypers, Y., X. Levaillant, P. Bouruet Aubertot, J. Vialard, M. Mac Phaden. « Tropical storm-induced near inertial internal waves during the Cirene experiment: energy fluxes and impact on vertical mixing"» Journal of Geophysical Research: oceans. Volume 118 issue 1: 358-380. In press.

De Monte, S., Soccodato, A., Alvain, S.,d’Ovidio, F., “Can we detect biodiversity hotspots from satellite?”, ISME Journal, in press (2013)doi: 10.1038/ismej.2013.72.

Dekaezemacker, J. & Bonnet, S. Sensitivity analysis of nitrogen fixation to combined nitrogen forms (NO3- and NH4+) in two strains of the marine diazotroph Crocosphaera watsonii (Cyanobacteria). Marine Ecology Progress Series 438: 33–46, doi: 10.3354/meps09297 (2011)

Dekaezemacker, J., Bonnet, S., Grosso, O., Moutin, T., Bressac, M. and Capone D.G., 2013. Evidence of active dinitrogen fixation in surface waters of the eastern tropical south pacific during El Niño and La Niña events and evaluation of its potential nutrient controls. Global Biogeochemical Cycles in press.

Dekaezemacker, J., Bonnet, S., Moutin, T., Grosso, O., Bressac, M., Capone D.G Evidence of Active Dinitrogen Fixation in Surface Waters of the Eastern Tropical South Pacific during El Niño and La Niña events and Evaluation of its Potential Nutrient Controls. Global Biogeochemical Cycles DOI: 10.1002/gbc.20063., (Accepted).

De Leeuw, G., C. Guieu, A. Arneth, N. Bellouin, L. Bopp , P. Boyd, H. Denier van der Gon, K. Desboeufs, F. Dulac, C. Facchini, B. Gantt, B. Langmann, N. Mahowald, E. Maranon, C. O’Dowd, N. Olgun, E. Pulido-Villena, M. Rinaldi, E. Stephanou, T. Wagener (2013). Ocean-Atmosphere interactions of particles. In: P. Liss and M. Johnson (Editors), "Ocean-Atmosphere Interactions of Gases and Particles" Publisher: Springer (in press)

Doglioli, A.M., Nencioli, F., Petrenko, A.A., Fuda, J.-L., Rougier, G., Grima, N. (2013), A software package and hardware tools for in situ experiments in a Lagrangian reference frame. J. Atmos. Ocean. Tech. doi: 10.1175/JTECH-D-12-00183.1

d’Ovidio, F., Zhou, M., Park, Y.H., Nencioli, F., Resplandy, L., Doglioli, A., Petrenko, A., Queguiner, B., Blain, S., (2012) Guiding biogeochemical campaigns with high resolution altimetry: waiting for the SWOT mission. "20 years of progress in radar altimetry" Symposium, Venice, Italy. Abstract Poster

Dubischar CD, Pakhomov EA, von Harbou L, Hunt BPV, Bathmann UV (2011) Salps in the Lazarev Sea, Southern Ocean: II. Biochemical composition. Marine Biology, DOI 10.1007/s00227-011-1785-5

Duhamel S., and T. Moutin, 2009. Carbon and phosphate incorporation rates of microbial assemblages in contrasting environments in the Southeast Pacific. Marine Ecology Progress Series, 375, 53–64. DOI: 10.3354/meps07765

Duhamel S, Björkman KM, Karl DM (2012) Light dependence of phosphorus uptake by microorganisms in the North and South Pacific subtropical gyres. Aquatic Microbial Ecology 67:225-238

Duhamel S., Björkman K.M., Van Wambeke F., Moutin T., and D.M. Karl. 2011. Characterization of alkaline phosphatase activity in the North and South Pacific subtropical gyres: implication for the phosphorus cycle. Limnology and Oceanography, 56(4), 1244-1254.

Duhamel S., Dyhrman S.T., and D.M. Karl, 2010. Alkaline phosphatase activity and regulation in the North Pacific Subtropical Gyre. Limnology and Oceanography, 55(3), 1414–1425. DOI: 10.4319/lo.2010.55.3.1414

Duhamel S., Gregori G., Van Wambeke F., and J. Nedoma, 2009. Detection of extracellular phosphatase activity of heterotrophic prokaryotes at the single cell level by flow cytometry. Current Protocols in Cytometry, 49:11.18.1–11.18.8. DOI: 10.1002/0471142956.cy1118s49.

Duhamel S., Gregori G., Van Wambeke F., Mauriac R., and J. Nedoma, 2008. A method for analysing phosphatase activity in aquatic bacteria at the single cell level using flow cytometry. Journal of Microbiological Methods, 75, 269–278. DOI: 10.1016/j.mimet.2008.06.018

Duhamel, S., & T. Moutin, 2009. Carbon and Phosphate incorporation rates of microbial assemblages in contrasting environments in the Southeast Pacific. 2009. Marine Ecological Progress Series, 375, 53-64. doi : 10.3354/meps07765

Dupouy, C., Neveux, J., Dirberg, G., Röttgers, R., Tenório, M. M. B., S. Ouillon, 2008. Bio-optical properties of the marine cyanobacteria Trichodesmium spp., Journal of Applied Remote Sensing, 2, 1-17. doi:10.1117/1.2839036.

Dupouy, C., Benielli-Gary, D., Neveux, J., Dandonneau, Y, T. Westberry, 2011. A new algorithm for detecting Trichodesmium surface blooms in the South Western Tropical Pacific, Biogeosciences, 8, 1-17, doi:10.5194/bg-8-1-2011.

Elskens, M., N. Brion, K.O. Buesseler, B.A.S. Van Mooy, P. Boyd, F. Dehairs. N. Savoyes and W. Baeyens (2008). Primary, new and export production in the NW Pacific Subarctic Gyre during the VERTIGO K2 experiments. Deep-Sea Res. II. 55: 1594-1604.

Grégori, G., M. Denis, S. Duhamel, and F. Wambeke. 2011. Analysis of Phosphatase Activity from Aquatic Heterotrophic Bacteria at the Single Cell Level by Flow Cytometry: Example of a Development Achieved in the Regional Flow Cytometry Platform for Microbiology (Precym) Hosted by the Oceanology Center of Marseille, p. 255-258. In H.-J. Ceccaldi, I. Dekeyser, M. Girault and G. Stora [eds.], Global Change: Mankind-Marine Environment Interactions. Springer Netherlands. DOI: 10.1007/978-90-481-8630-3_44

Guidi, L. and others 2009. Effects of phytoplankton community on production, size, and export of large aggregates: A world-ocean analysis. Limnol. Oceanogr. 54: 1951-1963.

Guidi, L. and others 2012. Does eddy-eddy interaction control surface phytoplankton distribution and carbon export in the North Pacific Subtropical Gyre? J. Geophys. Res. 117: G02024.

Guidi, L., Calil P. H. R., Duhamel S., Björkman K. M., Doney S. C., Jackson G. A., Li B., Church M. J., Tozzi S., Kolber Z. S., Richards K. J., Fong A. A., Letelier R. M., Gorsky G., Stemman L., and D. M. Karl. 2012. Does eddy-eddy interaction control surface phytoplankton distribution and carbon export in the North Pacific Subtropical Gyre? Journal of Geophysical Research, 117, G02024, doi:10.1029/2012JG001984.

Guidi, L., G. A. Jackson, L. Stemmann, J. C. Miquel, M. Picheral, and G. Gorsky. 2008. Relationship between particle size distribution and flux in the mesopelagic zone. Deep-Sea Res. I. 55: 1364-1374.

Guidi, L., L. Stemmann, L. Legendre, M. Picheral, L. Prieur, and G. Gorsky. 2007. Vertical distribution of aggregates (> 110 µm) and mesoscale activity in the northeastern Atlantic: Effects on the deep vertical export of surface carbon. Limnol. Oceanogr. 52: 7-18.

Harriet Alexander, Bethany D. Jenkins, Tatiana A. Rynearson, Melissa Mercier, Mak A. Saito, and Sonya T. Dyhrman (2012) The identification of stably expressed reference genes from high-throughput sequence data Frontiers in Microbiology 3:385 doi: 10.3389/fmicb.2012.00385

Hmelo L.R., Mincer T. J., and Van Mooy B. A. S. (2011) Possible influence of bacterial quorum sensing on the hydrolysis of sinking particulate organic carbon in marine environments. Environ. Microbiol. Reports 3: 682-688.

Hmelo, L.R., Van Mooy, B.A.S., and Mincer, T.J. (2012) Bacerial epibionts in Trichodesmium colonies are distinct from bacteria in surrounding waters. Aquat. Microb. Ecol.67: 1-14.

Hu, Z.H., Petrenko, A.A., Doglioli, A.M., Dekeyser, I. (2011), Study of a mesoscale anticyclonic eddy in the western part of the Gulf of Lion. J. Mar. Syst., Vol.88/1, pp.3-11, doi: 10.1016/j.jmarsys.2011.02.008 . see preprint

Hunt BPV and Hosie GW (2008) Southern Ocean biogeography and taxonomic resolution: What’s in the name? Marine Biology 155: 191-203

Hunt BPV, Pakhomov EA, Hosie GW, Siegel V, Ward P and Bernard K (2008) Pteropods in Southern Ocean ecosystems. Progress in Oceanography 78: 193-221

Hunt BPV, Pakhomov EA, Siegel V, Strass V, Cisewski B, Bathmann U (2011) The seasonal cycle of the Lazarev Sea macrozooplankton community and a potential shift to top down trophic control in winter. Deep-Sea Research II 58 (Southern Ocean GLOBEC special issue): 1662-1676

Jardon, F., P. Bouruet-Aubertot, Y. Cuypers, F.Vivier, . ;Lourenço , « Internal waves and vertical mixing in the Storfjorden Polynya, Svalbard» Journal Of Geophysical Reasearch : oceans. Volume 116, Issue C12, DOI: 10.1029/2010JC00691.8; 2011

Kathleen Ruttenberg and Sonya T. Dyhrman (2012) Dissolved organic phosphorus production during simulated phytoplankton blooms in a coastal upwelling system. Frontiers in Microbiology 3:274. doi: 10.3389/fmicb.2012.00274

Kersalé, M., Doglioli, A.M., Petrenko, A.A. (2011), Sensitivity study of the generation of mesoscale eddies in a numerical model of Hawaii islands. Ocean Sci., Vol.7, pp.277-291, doi : 10.5194/os-7-277-2011 . see Open Access paper or see preprint

Kersalé, M., Petrenko, A.A., Doglioli, A.M., Dekeyser, I., Nencioli, F. (2013), Physical characteristics and dynamics of the coastal Latex09 Eddy derived from in situ data and numerical modeling. J. Geophys. Res., Vol.118, pp.1-11, doi:10.1029/2012JC008229. see preprint

Kessler, W. S. and S. Cravatte, Mean Circulation of the Coral Sea, Accepted Journal of Geophysical Research

Knapp, A. N. et al. (2005). N isotopic composition of dissolved organic nitrogen and nitrate at the Bermuda Atlantic Time-series Study site, Global Biogeochem. Cycles, 19, GB1018, doi:10.1029/2004GB002320. (no page #s - it’s an AGU publication)

Knapp, A.N., P.J. DiFiore, C. Deutsch, D.M. Sigman, and F. Lipschultz, 2008, Nitrate isotopic composition between Bermuda and Puerto Rico Implications for N2 fixation in the Atlantic Ocean, Global Biogeochem. Cycles, 22, GB3014.

Knapp, A.N., Dekaezemacker, J., Bonnet, S. Sohm, J.A. and Capone, D.G. Sensitivity of Trichodesmium and Crocosphaera abundance and N2 fixation rates to varying NO3 - and PO4 3- concentrations in batch cultures. Aquatic Mircrobial Ecology, 66, 223-236, doi:10.3354/ame01577 (2012)

Küpper, H., Sven Seibert, Ivan Šetlík, Ondrej Prášil, Eva Šetlikova, Jens Lohscheider, Orly Levitan, Martina Strittmatter, Iwona Adamska and Ilana Berman-Frank. 2008. Iron Limitation in Trichodesmium reveals new insights into regulation of photosynthesis for N-fixation. New Phytologist. 179, 784-798.

Leblanc, K., and Hutchins, D. A.: New applications of a biogenic silica deposition fluorophore in the study of oceanic diatoms, Limnology and Oceanography-Methods, 3, 462-476, 2005.

Li L, Mackas D, Hunt B, Schweigert J, Pakhomov E, Perry RI, Galbraith M, Pitcher TJ (2013) Zooplankton communities in the Strait of Georgia, British Columbia, track large-scale climate forcing over the Pacific Ocean. Progress in Oceanography (in press)

Loisel, H., V. Vantrepotte, K. Norkvist, X.Mériaux, M. Kheireddine, J. Ras, M. Pujo-Pay, Y. Combet, K. Leblanc, G. Dall’Olmo, R. Mauriac, D. Dessailly and T. Moutin (2011). Characterization of the bio-optical anomaly and diurnal variability of particulate matter, as seen from scattering and backscattering oefficients, in ultra-oligotrophic eddies of the Mediterranean Sea, Biogeosciences, 8, 3295-3317. doi:10.5194/bg-8-3295-2011.

Longnecker K., Lomas M. W., and Van Mooy B. A. S. (2010) Abundance and diversity of heterotrophic bacterial cells assimilating 33P-phosphate in the subtropical North Atlantic Ocean. Environ. Microbiol.12: 2773-2782.

Louie L. Wurch, Erin M. Bertrand, Benjamin A. S. Van Mooy, Mak Saito, and Sonya T. Dyhrman (2011) Proteome changes driven by phosphorus deficiency and recovery in the brown tide-forming alga Aureococcus anophagefferens. Public Library of Science (PLoS) One 6: e28949. doi:10.1371/journal.pone.0028949

Luo, Y.-W., Doney, S. C., Anderson, L. A., Benavides, M., Berman-Frank, I., Bode, A., Bonnet, S., Boström, K. H., Böttjer, D., Capone, D. G., Carpenter, E. J., Chen, Y. L., Church, M. J., Dore, J. E., Falcón, L. I., Fernández, A., Foster, R. A., Furuya, K., Gómez, F., Gundersen, K., Hynes, A. M., Karl, D. M., Kitajima, S., Langlois, R. J., LaRoche, J., Letelier, R. M., Marañón, E., McGillicuddy Jr., D. J., Moisander, P. H., Moore, C. M., Mouriño-Carballido, B., Mulholland, M. R., Needoba, J. A., Orcutt, K. M., Poulton, A. J., Rahav, E., Raimbault, P., Rees, A. P., Riemann, L., Shiozaki, T., Subramaniam, A., Tyrrell, T., Turk-Kubo, K. A., Varela, M., Villareal, T. A., Webb, E. A., White, A. E., Wu, J., and Zehr, J. P.: Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates, Earth Syst. Sci. Data, 4, 47-73, doi:10.5194/essd-4-47-2012 (2012)

Martin P., Van Mooy B. A. S., Heithoff A., and Dyhrman S. T. (2011) Phosphorus supply drives rapid turnover of membrane phospholipids in the diatom Thalassiosira pseudonanna. ISME J. 5, 1057-1060.

Martinez, E., D. Antoine, F. D’Ortenzio, B. Gentili (2009). Climate-driven basin-scale decadal oscillations of oceanic phytoplankton. Science, 36, 1253-1256.

Mauriac, R., Moutin, T., and Baklouti, M. 2011. Accumulation of DOC in Low Phosphate Low Chlorophyll (LPLC) area : is it related to higher production under high N:P ratio ?, Biogeosciences, 8, 933-950, doi:10.5194/bg-8-933-2011.

Mendez J., Guieu C. , Adkins J., Atmospheric input of Manganese and Iron to the ocean: Seawater dissolution experiments with Saharan and North American dusts, Marine Chemistry, 120, 34-43, 2010

Moisander PH, Beinart RA, Hewson I, White AE, Johnson KS, Carlson CA, Montoya JP, Zehr JP (2010) Unicellular Cyanobacterial Distributions Broaden the Oceanic N-2 Fixation Domain. Science 327:1512-1514

Moore CM, Mills MM, Arrigo KR Berman-Frank I, Bopp L, Boyd PW, Galbraith ED, Geider RJ, Guieu C, Jaccard SL, Jickells TD, La Roche J, Lenton TM, Mahowald NM, Marañón E, Marinov I, Moore JK, Nakatsuka T, Oschlies A, Saito MA, Thingstad TF, Tsuda A, Ulloa O (2013) Processes and patterns of oceanic nutrient limitation. Nature Geoscience, doi:10.1038/ngeo1765

Moore, C.M., Mills, M.M., Arrigo, K.R., Berman-Frank, I., Bopp, L., Boyd, P.W., Galbraith, E.D., Geider, R.J., Guieu, C., Jaccard, S.L., Jickells, T.D., La Roche, J., Lenton, T., Mahowald, N.M., Marañón, E., Marinov, I.,

Moore, J.K., Nakatsuka, T., Oschlies, A., Saito, M.A., Thingstad, T.F., Tsuda, A., Ulloa, O., 2013, Processes and patterns of oceanic nutrient limitation, Nature Geoscience, doi:10.1038/ngeo1765.

Moutin T., Karl D.M., Duhamel S., Rimmelin P., Raimbault P., Van Mooy B., and H. Claustre, 2008. Phosphate availability and the ultimate control of new nitrogen input by nitrogen fixation in the tropical Pacific Ocean. Biogeosciences, 5, 95–10

Moutin, T. and Prieur, L. : Influence of anticyclonic eddies on the Biogeochemistry from the Oligotrophic to the Ultraoligotrophic Mediterranean (BOUM cruise), Biogeosciences, 9, 3827-3855, doi:10.5194/bg-9-3827-2012, 2012.

Moutin, T., Karl, D. M., Duhamel, S., Rimmelin, P., Raimbault, P., Van Mooy, B. A. S., and H. Claustre. 2008. Phosphate availability and the ultimate control of new nitrogen input by nitrogen fixation in the tropical Pacific Ocean, Biogeosciences, 5, 95-109.

Moutin, T., Van Wambeke, F., and Prieur, L. : Introduction to the Biogeochemistry from the Oligotrophic to the Ultraoligotrophic Mediterranean (BOUM) experiment, Biogeosciences, 9, 3817-3825, doi:10.5194/bg-9-3817-2012, 2012.

Murakami, H., Dupouy C., 2013. Atmospheric correction and inherent optical property estimation in the southwest New Caledonia lagoon using AVNIR-2 high-resolution data, Applied Optics Vol. 52, Iss. 2, pp. 182–198Nencioli, F., d’Ovidio, F., Doglioli, A.M., Petrenko, A.A. (2011), Surface coastal circulation patterns by in-situ detection of Lagrangian Coherent Structures. Geophys. Res. Lett., Vol.38, L17604, doi:10.1029/2011GL048815. see preprint

Nencioli F., F. d’Ovidio, A.M. Doglioli and A.A. Petrenko, 2011. "Surface coastal circulation patterns by in-situ detection of Lagrangian Coherent Structures". Geophysical Research Letters, Vol 38, L17604. doi: 10.1029/2011GL048815

Pakhomov EA, Hall J, Williams M, Hunt BPV, Stevens, C. (2010) Biology of Salpa thompsoni in waters adjacent to the Ross Sea, Southern Ocean, during austral summer 2008. Polar Biology DOI: 10.1007/s00300-010-0878-9

Para, J., Charrière, B., Matsuoka, A., Miller, WL., Rontani, JFR., Sempéré, R. (2013). UV/PAR radiations and DOM properties in surface coastal waters of the Canadian shelf of the Beaufort Sea during summer 2009. Biogeosciences, vol. 10, p.2761-2774.

Patrick Martin, Benjamin A. S. Van Mooy, Abigail Heithoff, and Sonya T. Dyhrman (2011) Phosphorus supply drives rapid turnover of membrane phospholipids in the diatom Thalassiosira pseudonana International Society of Microbial Ecology (ISME) Journal 5:1057-1060.

Picheral, M., L. Guidi, L. Stemmann, D. M. Karl, G. Iddaoud, and G. Gorsky. 2010. The Underwater Vision Profiler 5: An advanced instrument for high spatial resolution studies of particle size spectra and zooplankton. Limnol. Oceanogr. Meth. 8: 462–473.

Poggiale, J.C., M. Baklouti, B. Queguiner, and B. Kooijman. (2010) How far details are important in ecosystem modelling : the case of multi-limiting nutrients in phytoplankton - zooplankton interactions. Phil. Trans. R. Soc. B, 365 :3495_3507, 2010.

Popendorf K.J., Tanaka T., Pujo-Pay M., Lagaria A., Couties C., Conan P., Oriol L., Sofen L.E., Moutin T., Van Mooy B.A.S. (2011). Gradients in intact polar diacylglycerolipids across the Mediterranean Sea are related to phosphate availibility. Biogeosci. 8: 2547-2560.

Popendorf, K.J., Lomas, M.W., and Van Mooy, B.A.S. (2011) Microbial sources of intact polar diacylglycerolipids in the western North Atlantic Ocean. Org. Geochem. 42: 803–811.

Rahav E., Herut B., Levi A., Mulholland R.M. and Berman-Frank I (2013 b), Springtime contribution of dinitrogen fixation to primary production across the Mediterranean. Ocean Sciences, 9, 1-10, doi: 10.5194/os-9-1-2013.

Rahav E., Herut B., Stambler N., Bar-Zeev E., Mulholland R.M., and I. Berman-Frank (2013 a), Uncoupling between dinitrogen fixation and primary productivity in the Eastern Mediterranean Sea, JGR Biogeosciences, 18, 195-202, doi: 10.1002/jgrg.20023.

Read, B., Jessica Kegel, Mary Klute, Alan Kuo, Stephan Lefebvre, John Miller, Andy Allen, Virginia Armburst, Kay Bidle, Mark Borodovsky, Chris Bowler, Colin Brownlee, Jean-Michel Claverie, Mark Cock, Colomban de Vargas, Marek Elias, Stephan Frickenhaus, Richard Geider, Vadim N. Gladyshev, Karina Gonzalez, Chittibabu Guda, Ahmad Hadaegh, Emily Herman, Deborah Iglesias-Rodriguez, Tracey Lawson, Florian Leese, Yao-Cheng Lin, Erica Lindquist, Alexei Lobanov, Susan Lucas, Mary E. Marsh, Florian Maumus, Christoph Mayer, Thomas Mock, Adam Monier, Herve Moreau, Bernard Mueller-Roeber, Johnathan Napier, Hiroyuki Ogata, Micaela Parker, Konrad H. Paszkiewicz, Ian Probert, Hadi Quesneville, Christine Raines, Stefan Rensing, Diego Riano, Thomas Richards, Sophie Richier, Asaf Salamov, Analissa Sarno, Jeremy Schmutz, Declan Schroeder, Yoshihiro Shiraiwa, Darren M. Soanes, Michael Steinke, Klaus Valentin, Mark Van der Geizen, Yves Van der Peer, Assaf Vardi, Frederic Verret, Peter Von Dossow, Glen Wheeler, Bryony Williams, Willie Wilson, Gordon Wolfe, Alexandra Worden, Louie L. Wurch, Jeremy Young, Joel B. Dacks, Charles F. Delwiche, &Sonya T. Dyhrman, Gernot Glockner, Uwe John, Tom Richards, Alexandra, Worden, Xiaoyu Zhang and Igor V. Grigoriev Pan genome of the phytoplankton Emiliania drives its global distribution (2013) Nature 499:209-213. &designated as a co-contributing senior author for co-writing the manuscript

Ridame, C., Le Moal, M., Guieu, C., Ternon, E., Biegala, I., L’Helguen, S. and Pujo-Pay, M., 2011, Nutrient control of N2 fixation in the oligotrophic Mediterranean Sea and the impact of Saharan dust events,Biogeosciences, 8, 2773–2783, 2011

Rubin, M., Ilana Berman-Frank, Yeala Shaked. 2011. Utilization of mineral iron by the marine diazotroph Trichodesmium. Nature Geosciences. 4,529–534

Sharma A.K., Becker J.W., Ottesen E.A., Bryant J.A., Duhamel S., Karl D.M., Cordero O.X., Repeta D.J. and E.F. DeLong. 2013. Distinct dissolved organic matter sources induce rapid transcriptional responses in sympatric populations of Prochlorococcus, Pelagibacter and the OM60 Clade. Environmental Microbiology. In revision.

Sonya T. Dyhrman and #Sheean T. Haley (2011) Arsenate resistance in the marine diazotroph Crocosphaera watsonii. Frontiers in Microbiology 2:214. doi:10.3389/fmicb.2011.00214.

Sonya T. Dyhrman, Bethany D. Jenkins, Tatiana A. Rynearson, Mak A. Saito, Melissa L. Mercier, #Harriet Alexander, LeAnn P. Whitney, Andrea Drzewianowski, Vladimir V. Bulygin, Erin M. Bertrand, Zhijin Wu, Claudia Benitez-Nelson, and #Abigail Heithoff (2012) the transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response. Public Library of Science (PLoS) One 7:e3376. doi:10.1371/journal.pone.0033768

Steinberg, D.K., B.A.S. Van Mooy, K.O. Buesseler, P.W. Boyd, T. Kobari and D.M. Karl (2008). Microbial vs. zooplankton control of sinking particle flux in the ocean’s twilight zone. Limnol. Oceanogr. 53:1327-1338.

Talarmin A., Van Wambeke F., Duhamel S., Catala P., Moutin T., and P. Lebaron. 2011. Improved methodology to measure taxon-specific phosphate uptake in live and unfiltered samples. Limnology and Oceanography: Methods, 9:443-453. DOI: 10.4319/lo.2011.56.4.1244

Tedetti, M., Sempéré, R., Vasilkov, A., Charrière, B., Nérini, D., Miller, W.L., Kawamura, K. and Raimbault, P. (2007). High penetration of ultraviolet radiation in the south east Pacific waters. Geophysical Research Letters 34: doi: 10.1029/2007GL029823. issn: 0094-8276.Thompson AW, Foster RA, Krupke A, Carter BJ, Musat N, Vaulot D, Kuypers MMM, Zehr JP (2012) Unicellular Cyanobacterium Symbiotic with a Single-Celled Eukaryotic Alga. Science 337:1546-1550

Tedetti, M., Longhitano R., Garcia N., Guigue G., Ferretto N., Goutx M. (2012). Fluorescence properties of dissolved organic matter in coastal Mediterranean waters influenced by a municipal sewage effluent (Bay of Marseilles, France). Environmental Chemistry, 9 (5), 438- 449.

Tedetti M., Cuet P., Guigue C., Goutx M. (2011) Characterization of dissolved organic matter in a coral reef ecosystem subjected to anthropogenic pressures (La Réunion Island, Indian Ocean) using multi-dimensional fluorescence spectroscopy, Scienc

e of The Total Environment, 409, 2198-2210.

Ternon E. C. Guieu, C. Ridame, L’Helguen, S, Catala, P., 2011, Longitudinal variability of the biogeochemical role of Mediterranean aerosols in the Mediterranean Sea, Biogeosciences, 8, 1067–1080, 2011

Wagener T.,Guieu C., Losno R.,Bonnet S.,Mahowald N., 2008, Revisiting atmospheric dust export to the South Hemisphere ocean, Global Biogeochemical Cycles, 22, GB2006, doi:10.1029/2007GB002984.

Van Mooy B. A. S. and Fredricks H. F. (2010) Bacterial and eukaryotic intact polar lipids in the eastern subtropical South Pacific: water-column distribution, planktonic sources, and fatty acid composition. Geochimica et Cosmochimica Acta. 74: 6499-6516.

Van Mooy, B.A.S. and A.H. Devol (2008) Assessing nutrient limitation of Prochlorococcus in the North Pacific subtropical gyre by using an RNA capture method. Limnol. Oceanogr. 53:78-88.

Van Mooy, B.A.S., Fredricks, H.F., Pedler, B.E., Dyhrman, S.T., Karl, D.M., Koblížek, M., Lomas, M.W., Mincer. T., Moore, L.R., Moutin, T., Rappé, M.S., and Webb, E.A. (2009) Phytoplankton in the ocean substitute lipids in response to phosphorus scarcity. Nature. 458:69-72.

Van Mooy, B.A.S., H.F. Fredricks, B.E. Pedler, S.T. Dyhrman, D.M. Karl, M. Koblizek, M.W. Lomas, T.J. Mincer, L.R. Moore, T. Moutin, M.S. Rappe, and E.A. Webb, 2009. Phytoplankton in the Ocean Use Non-Phosphorus Lipids in Response to Phosphorus Scarcity, Nature, 458, 69-72. doi:10.1038/nature07659.

Van Mooy, B.A.S., Moutin, T., Duhamel, S., Rimmelin, P., and Van Wambeke, F. (2008) Phospholipid synthesis rates in the eastern subtropical South Pacific Ocean. Biogeosciences 5:95-109.

Van Mooy, B.A.S, Laura R. Hmelo, Laura E. Sofen, Shawn R. Campagna, Amanda L. May, Sonya T. Dyhrman, #Abigail Heithoff, Eric A. Webb, Lily Momper, and Tracy J. Mincer (2012) Quorum sensing control of phosphorus acquisition in Trichodesmium consortia. International Society of Microbial Ecology (ISME) Journal 6:422-429.

Van Wambeke F., Nedoma J., Duhamel S., and P. Lebaron, 2008. Alkaline phosphatase activity of marine bacteria studied with ELF97 phosphate: Success and limits in P-limited Mediterranean Sea. Aquatic Microbial Ecology, 52, 245–251. DOI: 10.3354/ame01238

Van Wambeke F., Obernosterer I., Moutin T., Duhamel S., Ulloa O. and H., Claustre. 2008. Heterotrophic prokaryotic production in the South East Pacific: longitudinal trends and coupling with primary production. Biogeosciences, 5, 157–169.

Van Wambeke, F., Bonnet, S., Moutin, T., Raimbault, Alarcón , G., Guieu, C. Factors limiting heterotrophic bacterial production in the Southern Pacific Ocean. Biogeosciences, Vol. 5, 833-845 (2008)

White, A. and Sonya T. Dyhrman (2013) The Marine Phosphorus Cycle Frontiers in Microbiology 4:105. doi: 10.3389/fmicb.2013.00105
Wuttig K., T. Wagener, M. Bressac, A. Dammshäuser, P. Streu, C. Guieu, and P. L. Croot, 2013, Impacts of dust deposition on dissolved trace metal concentrations (Mn, Al and Fe) during a mesocosm experiment Biogeosciences 10, 2583-2600 (SI DUNE)

Xie, X., Y. Cuypers, P. Bouruet-Aubertot, B. Ferron, A. Pichon, A. Lourenço, N.Cortes. "Large amplitude internal tides, solitary waves and turbulence in the central Bay of Biscay". Geophys. Res. Letters 2013.

Zehr JP, Mellon MT, Zani S (1998) New nitrogen-fixing microorganisms detected in oligotrophic oceans by amplification of nitrogenase (nifH) genes. Applied and Environmental Microbiology 64: 3444-3450.

Zehr J, Waterbury JB, Turner PJ, Montoya JP et al. (2001) Unicellular cyanobacteria fix N2 in the subtropical North Pacific ocean. Nature, 412, 635-638.

Zehr JP, Bench SR, Carter BJ, Hewson I, Niazi F, et al. (2008) Globally Distributed Uncultivated Oceanic N2-Fixing Cyanobacteria Lack Oxygenic Photosystem II. Science 322: 1110-1112.